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Against the Tide: A Fish Adapts Quickly to Lethal Levels of Pollution

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    What’s their secret and can humans learn from them?

    The Atlantic killifish’s natural habitats include pristine salt-marsh estuaries and polluted salt marshes high in PCB, PAH, or metals.

    The Atlantic killifish’s natural habitats include pristine salt-marsh estuaries and those high in PCB, PAH, or metals.

    MIAMI, Fla. (December 12, 2016)—Evolution is working hard to rescue some urban fish from a lethal, human-altered environment, according to a new study researchers from the University of California, Davis and the University of Miami Rosenstiel School of Marine and Atmospheric Science published December 9 in the journal Science.

    While environmental change is outpacing the rate of evolution for many other species, Atlantic killifish living in four polluted East Coast estuaries turn out to be remarkably resilient. These fish have adapted to levels of highly toxic industrial pollutants that would normally kill them.

    The killifish is up to 8,000 times more resistant to this level of pollution than other fish, the study found. While the fish is not commercially valuable, it is an important food for other species and an environmental indicator.

    What makes Atlantic killifish so special is their extremely high levels of genetic variation, higher than any other vertebrate—humans included—measured so far. The more genetic diversity, the faster evolution can act. That’s one reason insects and weeds can quickly adapt and evolve to resist pesticides, and why pathogens can evolve quickly to resist drugs created to destroy them. Not all species are so lucky, however.

    The whole genome sequencing of the Atlantic killifish revealed innovative insights into how animals quickly evolve and may adapt to climate change because of its biology and ecology. Two co-authors from the Rosenstiel School, Douglas Crawford and Marjorie Oleksiak, initiated genomic research in the Atlantic killifish by isolating more than 69,000 genes sequences and discovered large genetic variation. “Killifish have large populations that make natural selection more effective and live in a diversity of environments which enhances the genetic diversity,” Crawford said. “This genetic diversity is the basis for evolutionary adaptation that was revealed by taking the ambitious goal to sequencing the whole genome of 394 individuals.”

    “Some people will see this as a positive and think, ‘Hey, species can evolve in response to what we’re doing to the environment!’” said lead author Andrew Whitehead, associate professor in the UC Davis Department of Environmental Toxicology and lead author of the study. “Unfortunately, most species we care about preserving probably can’t adapt to these rapid changes because they don’t have the high levels of genetic variation that allow them to evolve quickly.”

    The scientists sequenced complete genomes of nearly 400 Atlantic killifish from polluted and non-polluted sites at New Bedford Harbor in Massachusetts; Newark Bay, New Jersey; Connecticut’s Bridgeport area; and Virginia’s Elizabeth River. The sites have been polluted since the 1950s and 1960s by a complex mixture of industrial pollutants including dioxin, heavy metals, hydrocarbons and other chemicals.

    The team’s genetic analysis suggests that the Atlantic killifish’s genetic diversity make them unusually well positioned to adapt to survive in radically altered habitats. At the genetic level, the tolerant populations evolved in highly similar ways. This suggests that these fish already carried the genetic variation that allowed them to adapt before the sites were polluted, and that there may be only a few evolutionary solutions to pollution.

    The study lays the groundwork for future research that could explore which genes confer tolerance of specific chemicals. Such work could help better explain how genetic differences among humans and other species may contribute to differences in sensitivity to environmental chemicals.

    “If we know the kinds of genes that can confer sensitivity in another vertebrate animal like us, perhaps we can understand how different humans, with their own mutations in these important genes, might react to these chemicals,” Whitehead said.

    “This study shows that different populations of Atlantic killifish exposed to toxic pollution evolve tolerance to that pollution through changes in one molecular pathway,” said George Gilchrist, program director in the National Science Foundation’s Division of Environmental Biology, which funded the study along with the National Institute of Environmental Health Sciences. “This pathway may play a similar role in many animals exposed to pollutants, with slightly different adaptations in response to different toxins.”

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